← Gene expression

Mutation types, mildest to most severe

Every point mutation is a substitution — the severity question is really about what happens to the amino acid it produces.
TypeWhat happens to the codonEffect on protein
Silent / same-senseCodon changes, but still codes the SAME amino acid (degeneracy)No effect — protein unchanged
MissenseCodon changes to a DIFFERENT amino acidMay or may not change function, depending on the amino acid and its role
NonsenseCodon changes to a STOP codonProtein cut short — usually non-functional
Frameshift (insertion/deletion)Every codon downstream shiftsUsually wrecks the whole protein from that point on

Substitutions can only ever be silent, missense, or nonsense — a frameshift is never caused by a substitution, only by an insertion or deletion.

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Why two separate steps, not one

DNA stays in the nucleus, protected, and can be transcribed into many mRNA copies for repeated use — while ribosomes in the cytoplasm can only read single-stranded mRNA, not double-stranded DNA. Two steps also allow the cell to control gene expression at the transcription stage, before any protein is made.

Silent vs missense vs nonsense — the quick test

  • Same amino acid → SILENT.
  • Different amino acid, protein may still work → MISSENSE.
  • A STOP codon appears early → NONSENSE.

Practice for this standard covers the whole topic — flashcards and quiz.